species:   Rhsol
pid:       PID0577
parent:    Rhi-milR-148
paralog:   
locus:     KB317742.1:28130-28206
matures:   ['UGGGCUGUAAGUCCUCAAGGG', 'CUUGAGACAAGUUCCGU']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317742.1:28130-28206

3 out of bounds
16 alignments
14 proper strand
13 stranded perfect matches

      ********************                  ************************         
CGUAGGUCCCUUGAGACAAGUUCCGUGGAAGUAUACACAAUUCCCCUGGGCUGUAAGUCCUCAAGGGGGGAUAUACA
.(((..(((((((((((.(((((.(.((((..........)))).).)))))....)).))))))))).....))).
----------------------------------------------UGGGCUGUAAGUCCUCAAGGG---------- l=21 a=1 c
---------CUUGAGACAAGUUCCGU--------------------------------------------------- l=17 a=0 c*
----------------------------------------------UGGGCUGUAAGUCCUCAAGGGG--------- l=22 a=5 ma
--------CCUUGAGACAAGUUCCGU--------------------------------------------------- l=18 a=0 ma*

--UAGGUCCCUUGAGACAAGUUuCGUG-------------------------------------------------- l=25 a=1 
-----------UGAGACAAGUUCCGUGGAAG---------------------------------------------- l=20 a=1 
----------------------------AAGUAUACACAAUUCCCCUGGGCUG------------------------ l=25 a=1 
----------------------------------------------UGGGCUGUAAGUCCUCAAGGG---------- l=21 a=1 (c)
----------------------------------------------UGGGCUGUAAGUCCUCAAGGGG--------- l=22 a=5 (ma)
----------------------------------------------UGGGCUGUAAGUCCUCAAGGGGG-------- l=23 a=4 
----------------------------------------------UGGGCUGUAAGUCCUCAAGGGGGGAUAUA-- l=29 a=1 

mb-01111
ax-1011011
ku-01
ss-101111111010
fn-111
